[ Source: biobambam2 ]
Package: biobambam2 (2.0.185+ds-1)
Links for biobambam2
Debian Resources:
Download Source Package biobambam2:
- [biobambam2_2.0.185+ds-1.dsc]
- [biobambam2_2.0.185+ds.orig.tar.xz]
- [biobambam2_2.0.185+ds-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [gitlab.com]
Similar packages:
tools for early stage alignment file processing
This package contains some tools for processing BAM files, including
bamsormadup: parallel sorting and duplicate marking bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. bamsort: reads BAM and writes BAM resorted by coordinates or query name bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
Other Packages Related to biobambam2
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [arm64, ppc64el]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [amd64]
- dep: libgcc-s1 (>= 7) [i386]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libmaus2-2 (>= 2.0.813+ds)
- collection of data structures and algorithms for biobambam
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download biobambam2
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 9,346.1 kB | 64,727.0 kB | [list of files] |
arm64 | 8,478.3 kB | 63,459.0 kB | [list of files] |
i386 | 9,987.0 kB | 72,831.0 kB | [list of files] |
ppc64el | 9,189.8 kB | 78,371.0 kB | [list of files] |