Paket: python3-pairtools (1.0.3-1 und andere)

[ Quellcode: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Andere Pakete mit Bezug zu python3-pairtools

• dep: libc6 (>= 2.17)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC Support-Bibliothek

• dep: libstdc++6 (>= 11)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3-bioframe

  library to enable flexible, scalable operations on genomic interval dataframes

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-numpy (>= 1:1.25.0)

  Fast array facility to the Python language (Python 3)

• dep: python3-numpy-abi9

  virtuelles Paket, bereitgestellt durch python3-numpy

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam (>= 0.20.0+ds-3~)

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  Wissenschaftliche Werkzeuge für Python 3

• dep: python3-yaml

  Python3-Parser und -Emitter für YAML

• sug: python3-pairtools-examples (>= 1.0.2)

  Process sequencing data from a Hi-C experiment (examples)

python3-pairtools herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
ppc64el	1.0.3-1+b2	189,6 kB	956,0 kB	[Liste der Dateien]