Paket: r-bioc-spatialexperiment (1.16.0+ds-2)

[ Quellcode: r-bioc-spatialexperiment  ]

S4 Class for Spatially Resolved -omics Data

Defines an S4 class for storing data from spatial -omics experiments. The class extends SingleCellExperiment to support storage and retrieval of additional information from spot-based and molecule-based platforms, including spatial coordinates, images, and image metadata. A specialized constructor function is included for data from the 10x Genomics Visium platform.

Andere Pakete mit Bezug zu r-bioc-spatialexperiment

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.20

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-bioc-biocfilecache

  GNU R management of files across sessions

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-magick

  advanced graphics and image-processing in GNU R

• dep: r-cran-rjson

  GNU R package for converting between R and JSON objects

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-dropletutils

  BioConductor utilities for handling single-cell droplet data

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

• sug: r-cran-testthat

  GNU R testsuite

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