Paket: r-bioc-rtracklayer (1.38.0-1) [debports]

[ Quellcode:  ]

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Andere Pakete mit Bezug zu r-bioc-rtracklayer

• dep: libc6 (>= 2.15)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libssl1.1 (>= 1.1.0)

  Paket nicht verfügbar

• dep: r-api-3.4

  Paket nicht verfügbar

• dep: r-base-core (>= 3.4.3-1)

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-bioc-biocgenerics (>= 0.13.8)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.43.7)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.3.14)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.5.4)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.21.20)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.11.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.17.8)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.13.13)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.9.4)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-rcurl (>= 1.4-2)

  GNU R General network (HTTP/FTP/...) client interface

• dep: r-cran-xml (>= 1.98-0)

  GNU R package for XML parsing and generation

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

• sug: r-bioc-bsgenome (>= 1.33.4)

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-cran-runit

  GNU-R-Paket, das ein Programmiergerüst für Komponententests bereitstellt

r-bioc-rtracklayer herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
m68k (inoffizielle Portierung)	1.824,3 kB	2.765,0 kB	[Liste der Dateien]