Paket: centrifuge (1.0.3-12) [debports]

[ Quellcode:  ]

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Andere Pakete mit Bezug zu centrifuge

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• dep: jellyfish

  Zählt k-mere in DNA-Sequenzen

• dep: libc6.1 (>= 2.37)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6.1-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC Support-Bibliothek

• dep: libstdc++6 (>= 13.1)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: libunwind8

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• dep: python3

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centrifuge herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
ia64 (inoffizielle Portierung)	779,7 kB	3.011,0 kB	[Liste der Dateien]