Paket: r-bioc-rtracklayer (1.64.0-1) [debports]

[ Quellcode:  ]

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Andere Pakete mit Bezug zu r-bioc-rtracklayer

• dep: libc6.1 (>= 2.38)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6.1-udeb

• dep: libcurl4t64 (>= 7.16.2)

  Einfach nutzbare Client-Bibliothek für URL-Übertragungen (OpenSSL-Variante)

• dep: libssl3t64 (>= 3.0.0)

  Werkzeugsatz für das Secure Socket Layer (SSL) - Laufzeitbibliotheken

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.19

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biocio (>= 1.14.0)

  standard input and output for Bioconductor packages

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.40.0)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 2.20.0)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.44.0)

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc (>= 1.50.0)

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-curl

  Moderner und flexibler Web-Client für GNU R

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-restfulr (>= 0.0.13)

  GNU R interface to RESTful web wervices

• dep: r-cran-xml (>= 1.98-0)

  GNU R package for XML parsing and generation

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

• sug: r-bioc-bsgenome (>= 1.72.0)

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-genefilter (>= 1.86.0)

  methods for filtering genes from microarray experiments

• sug: r-bioc-genomicfeatures (>= 1.56.0)

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-limma (>= 3.60.3)

  linear models for microarray data

• sug: r-bioc-org.hs.eg.db (>= 3.19.1)

  genome-wide annotation for Human

• sug: r-cran-runit

  GNU-R-Paket, das ein Programmiergerüst für Komponententests bereitstellt

r-bioc-rtracklayer herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
alpha (inoffizielle Portierung)	4.940,1 kB	6.661,0 kB	[Liste der Dateien]