Paket: kraken (1.1.1-2)

[ Quellcode: kraken  ]

assigning taxonomic labels to short DNA sequences

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.

Andere Pakete mit Bezug zu kraken

• dep: jellyfish1

  count k-mers in DNA sequences

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [nicht amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [nicht armel, armhf, i386]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgomp1 (>= 6)

  Unterstützungsbibliothek für GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 5.2)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

kraken herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	736,7 kB	1.532,0 kB	[Liste der Dateien]
arm64	730,6 kB	1.492,0 kB	[Liste der Dateien]
armel	728,6 kB	1.462,0 kB	[Liste der Dateien]
armhf	729,8 kB	1.418,0 kB	[Liste der Dateien]
i386	743,1 kB	1.542,0 kB	[Liste der Dateien]
mips64el	737,3 kB	1.558,0 kB	[Liste der Dateien]
ppc64el	736,7 kB	1.772,0 kB	[Liste der Dateien]
s390x	730,5 kB	1.508,0 kB	[Liste der Dateien]