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[ Source: maffilter  ]

Package: maffilter (1.3.1+dfsg-4)

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process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

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Download maffilter

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 254.0 kB1,312.0 kB [list of files]
arm64 233.3 kB1,304.0 kB [list of files]
armel 215.3 kB1,175.0 kB [list of files]
armhf 221.0 kB1,047.0 kB [list of files]
i386 260.8 kB1,291.0 kB [list of files]
mips64el 219.1 kB1,488.0 kB [list of files]
mipsel 220.3 kB1,413.0 kB [list of files]
ppc64el 252.9 kB1,432.0 kB [list of files]
s390x 231.5 kB1,324.0 kB [list of files]