Пакет: libbio-db-hts-perl (3.01-5)

[ Източник: libbio-db-hts-perl  ]

Perl interface to the HTS library

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package provides a Perl interface to the HTS library.

Други пакети, свързани с libbio-db-hts-perl

• dep: libbio-perl-perl

  BioPerl core perl modules

• dep: libc6 (>= 2.4)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: perl (>= 5.40.0-6)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.40.0

  виртуален пакет, предлаган от perl-base

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

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