Пакет: velvet (1.2.10+dfsg1-9)

[ Източник: velvet  ]

Nucleic acid sequence assembler for very short reads

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

Етикети: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Purpose: Analysing

Други пакети, свързани с velvet

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: zlib1g (>= 1:1.2.3.4)

  compression library - runtime

• sug: velvet-example

  Example data for the Velvet sequence assembler

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