Пакет: cutesv (2.1.1-1)

[ Източник: cutesv  ]

comprehensive discovery of structural variations of genomic sequences

Long-read sequencing enables the comprehensive discovery of structural variations (SVs). However, it is still non-trivial to achieve high sensitivity and performance simultaneously due to the complex SV characteristics implied by noisy long reads.

cuteSV is a sensitive, fast and scalable long-read-based SV detection approach. cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. Benchmarks on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology (ONT) datasets demonstrate that cuteSV has better yields and scalability than state-of-the-art tools.

Други пакети, свързани с cutesv

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• dep: python3-biopython

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• dep: python3-cigar

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• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-sklearn

  Python modules for machine learning and data mining - Python 3

• dep: python3-vcf

  Variant Call Format (VCF) parser for Python 3

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
all	36,5 кБ	225,0 кБ	[списък на файловете]