Пакет: r-bioc-genomicalignments (1.40.0-1)

[ Източник: r-bioc-genomicalignments  ]

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Други пакети, свързани с r-bioc-genomicalignments

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• dep: r-api-4.0

  виртуален пакет, предлаган от r-base-core

• dep: r-api-bioc-3.19

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.50.0)

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• dep: r-bioc-biocparallel (>= 1.38.0)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.72.1)

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• dep: r-bioc-genomeinfodb (>= 1.40.1)

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• dep: r-bioc-genomicranges (>= 1.56.1)

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• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 2.20.0)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.34.0)

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• sug: r-bioc-biocstyle (>= 2.32.1)

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• sug: r-bioc-bsgenome (>= 1.72.0)

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2 (>= 1.44.0)

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-edger (>= 4.2.0)

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicfeatures (>= 1.56.0)

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-rtracklayer (>= 1.64.0)

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-shortread (>= 1.62.0)

  GNU R classes and methods for high-throughput short-read sequencing data

• sug: r-cran-knitr

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• sug: r-cran-runit

  GNU R package providing unit testing framework

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