Списък на файловете в пакета trinityrnaseq в sid, архитектура ia64

/usr/bin/BubbleUpClustering
/usr/bin/Chrysalis
/usr/bin/CreateIwormFastaBundle
/usr/bin/FastaToDeBruijn
/usr/bin/GraphFromFasta
/usr/bin/QuantifyGraph
/usr/bin/ReadsToTranscripts
/usr/bin/Trinity
/usr/bin/fastaToKmerCoverageStats
/usr/bin/inchworm
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/DE_graph_to_dot.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/DTE_to_DTU.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/GOplot.Rscript
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/Glimma.Trinity.Rscript
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/PtR
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/edgeR.TMM.minimal.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/edgeR_funcs.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/get_cluster_info.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/heatmap.3.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/jaccard_distance.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/manually_define_clusters.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/misc_rnaseq_funcs.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/pairs3.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/rnaseq_plot_funcs.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/test.heatmap.3.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/tests/test_heatmap_w_pca.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/R/vioplot2.R
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/ROKU.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/TissueEnrichment/DE_graph_to_dot.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/TissueEnrichment/DE_results_to_pairwise_summary.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/TissueEnrichment/README.md
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/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/add_annot_to_trans_id.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/add_annotations_to_GO_and_lengths_file.R
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/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/assign_tissue_specific.pl
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/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cluster_sample_data/cleanme.pl
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/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cluster_sample_data/runMe.sh
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cluster_sample_data/samples.txt
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/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/cut_tree_into_clusters.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl
/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/deprecated/prep_n_run_GOplot.pl
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/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/subcluster_to_canvasXpress_html.make_index_html.pl
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/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/fusion_comparisons_via_maps_files.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/get_genes_from_maps_file.pl
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/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.tiers_to_boxplot.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl
/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/util/blat_map_filter_with_isoforms.pl
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