Пакет: pizzly (0.37.3+ds-9) [debports]

[ Източник:  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Други пакети, свързани с pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6.1 (>= 2.36)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6.1-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC support library

• dep: libstdc++6 (>= 12.2.0-12)

  GNU Standard C++ Library v3

• dep: libunwind8

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: python3-h5py

  general-purpose Python interface to hdf5

Изтегляне на pizzly

Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
ia64 (неофициална архитектура)	342,3 кБ	1 558,0 кБ	[списък на файловете]