Пакет: gmap (2024-10-20+ds-1)

[ Източник: gmap  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Етикети: Field: Biology, field::biology:bioinformatics, field::biology:structural, Role: Program, Purpose: Analysing

Други пакети, свързани с gmap

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

Изтегляне на gmap

Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
armel	4 923,7 кБ	46 231,0 кБ	[списък на файловете]