Пакет: bifrost (1.3.1-1) [debports]

[ Източник:  ]

parallel construction, indexing and querying of de Bruijn graphs

Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Други пакети, свързани с bifrost

• dep: libbifrost0 (>= 1.3.1)

  library for parallel construction, indexing and querying of de Bruijn graphs

• dep: libc6.1 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6.1-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC support library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
alpha (неофициална архитектура)	481,4 кБ	1 305,0 кБ	[списък на файловете]