Пакет: r-bioc-genomicalignments (1.18.1-1)

[ Източник: r-bioc-genomicalignments  ]

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Други пакети, свързани с r-bioc-genomicalignments

• dep: libc6 (>= 2.4)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: r-api-3.5

  виртуален пакет, предлаган от r-base-core

• dep: r-api-bioc-3.8

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-base-core (>= 3.5.2-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.15.3)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.13.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.33.4)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.15.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.19.11)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.9.13)

  BioConductor assay container

• rec: r-bioc-shortread (>= 1.24.0)

  GNU R classes and methods for high-throughput short-read sequencing data

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

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