Пакет: python-pbalign (0.3.2-1)

[ Източник: pbalign  ]

map Pacific Biosciences reads to reference DNA sequences (Python2)

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

pbalign is part of the SMRTAnalysis suite. This package provides the Python library backend.

Други пакети, свързани с python-pbalign

• dep: blasr (>= 5.3+0)

  mapping single-molecule sequencing reads

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-pbcommand

  common command-line interface for Pacific Biosciences analysis modules

• dep: python-pbcore

  Python 2 library for processing PacBio data files

• dep: python-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 2)

• rec: hdf5-tools

  Hierarchical Data Format 5 (HDF5) - Runtime tools

• rec: python-pbh5tools

  tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library

• sug: bowtie2

  ultrafast memory-efficient short read aligner

• sug: gmap

  spliced and SNP-tolerant alignment for mRNA and short reads

• sug: pbalign-doc

  documentation for pbalign

Изтегляне на python-pbalign

Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
all	36,5 кБ	224,0 кБ	[списък на файловете]