Пакет: r-bioc-shortread (1.40.0-1)

[ Източник: r-bioc-shortread  ]

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Други пакети, свързани с r-bioc-shortread

• dep: libc6 (>= 2.17)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC support library

• dep: libgomp1 (>= 4.2.1)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: r-api-3.5

  виртуален пакет, предлаган от r-base-core

• dep: r-base-core (>= 3.5.1-1)

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• dep: r-bioc-biobase

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• dep: r-bioc-biocgenerics (>= 0.23.3)

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• dep: r-bioc-biocparallel

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• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.15.6)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.17.25)

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• dep: r-cran-hwriter

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• dep: r-cran-lattice

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• dep: r-cran-latticeextra

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• dep: zlib1g (>= 1:1.1.4)

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• rec: r-cran-runit

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• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
arm64	4 901,5 кБ	7 354,0 кБ	[списък на файловете]