Списък на файловете в пакета hyphy-common в buster, архитектура all

/usr/lib/hyphy
/usr/share/doc/hyphy-common/changelog.Debian.gz
/usr/share/doc/hyphy-common/copyright
/usr/share/doc/hyphy-common/examples/BatchLanguage/MatrixIndexing.bf
/usr/share/doc/hyphy-common/examples/BatchLanguage/profile_test.bf
/usr/share/doc/hyphy-common/examples/Categories/data/aspectrin.nuc
/usr/share/doc/hyphy-common/examples/Categories/definitions+MLE.bf.gz
/usr/share/doc/hyphy-common/examples/Categories/definitions.bf.gz
/usr/share/doc/hyphy-common/examples/Categories/definitions2.bf.gz
/usr/share/doc/hyphy-common/examples/Categories/definitions3.bf
/usr/share/doc/hyphy-common/examples/Categories/displayFunction.bf
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/ReplicateConstraint1.bf
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/ReplicateConstraint2.bf
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/ReplicateConstraint3.bf
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/data/hiv.seq
/usr/share/doc/hyphy-common/examples/ConstraintDefinition/shared.bf
/usr/share/doc/hyphy-common/examples/DataFilters/HKY852blocks.bf
/usr/share/doc/hyphy-common/examples/DataFilters/HKY852blocks2models.bf
/usr/share/doc/hyphy-common/examples/DataFilters/data/actin2.flt.gz
/usr/share/doc/hyphy-common/examples/MoreComplexModels/ExonIntron.bf
/usr/share/doc/hyphy-common/examples/MoreComplexModels/Models/EI.mdl
/usr/share/doc/hyphy-common/examples/MoreComplexModels/Models/MG94x2.mdl
/usr/share/doc/hyphy-common/examples/MoreComplexModels/aa.bf
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/3.seq
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/stewart.aa
/usr/share/doc/hyphy-common/examples/MoreComplexModels/data/ubiq.flt
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/F81.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/HKY85.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/HKY85shared.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/JC69.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/K2P.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/K2Pshared.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/Non-Rev.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/REV.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/REVshared.bf
/usr/share/doc/hyphy-common/examples/SimpleAnalyses/data/hiv.nuc
/usr/share/doc/hyphy-common/examples/SimpleConstraints/F81K81uf_relratio.bf.gz
/usr/share/doc/hyphy-common/examples/SimpleConstraints/F81relrate.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/F81relratio.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/HKY85relrate.bf.gz
/usr/share/doc/hyphy-common/examples/SimpleConstraints/HKY85relratio.bf.gz
/usr/share/doc/hyphy-common/examples/SimpleConstraints/MolecularClockF81.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/MolecularClockHKY85.bf
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/3.seq
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/aspectrin1.nuc
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/aspectrin2.nuc
/usr/share/doc/hyphy-common/examples/SimpleConstraints/data/molclock.seq.gz
/usr/share/doc/hyphy-common/examples/Simulation/PBootstrapHetRates.bf
/usr/share/doc/hyphy-common/examples/Simulation/ParametricBootstrap.bf
/usr/share/doc/hyphy-common/examples/Simulation/RelativeRatePBS.bf.gz
/usr/share/doc/hyphy-common/examples/Simulation/data/3.seq
/usr/share/doc/hyphy-common/examples/Simulation/data/hiv.nuc
/usr/share/hyphy/ChartAddIns/Approximate_CDF
/usr/share/hyphy/ChartAddIns/Column Operations
/usr/share/hyphy/ChartAddIns/Complex Select Cells By Value
/usr/share/hyphy/ChartAddIns/Contigency Table
/usr/share/hyphy/ChartAddIns/Covariance
/usr/share/hyphy/ChartAddIns/DBAddIns/DescriptiveStats.bf
/usr/share/hyphy/ChartAddIns/DBAddIns/FromSQLFlatFile.bf
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/usr/share/hyphy/ChartAddIns/DBAddIns/ToChartWindow.bf
/usr/share/hyphy/ChartAddIns/DBAddIns/ToConsole.bf
/usr/share/hyphy/ChartAddIns/DBAddIns/ToFastaFile.bf
/usr/share/hyphy/ChartAddIns/DBAddIns/ToFastaFileFromPandit.bf
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/usr/share/hyphy/ChartAddIns/DBAddIns/ToSQLFlatFile.bf
/usr/share/hyphy/ChartAddIns/DBAddIns/ToTabFile.bf
/usr/share/hyphy/ChartAddIns/Descriptive Statistics
/usr/share/hyphy/ChartAddIns/Distribution Moments
/usr/share/hyphy/ChartAddIns/DistributionAddIns/Event Posteriors
/usr/share/hyphy/ChartAddIns/DistributionAddIns/Includes/posteriors.ibf
/usr/share/hyphy/ChartAddIns/DistributionAddIns/Most Likely Class Assignment
/usr/share/hyphy/ChartAddIns/DistributionAddIns/Posterior Distribution
/usr/share/hyphy/ChartAddIns/DistributionAddIns/Posterior Moments
/usr/share/hyphy/ChartAddIns/DistributionAddIns/Prior Moments
/usr/share/hyphy/ChartAddIns/Gaussian Penalty Clustering
/usr/share/hyphy/ChartAddIns/Goodness of Fit
/usr/share/hyphy/ChartAddIns/Histogram
/usr/share/hyphy/ChartAddIns/K-Mean Clustering
/usr/share/hyphy/ChartAddIns/KH Resampler
/usr/share/hyphy/ChartAddIns/Linear Fit
/usr/share/hyphy/ChartAddIns/Mean Profile Plot
/usr/share/hyphy/ChartAddIns/Median Profile Plot
/usr/share/hyphy/ChartAddIns/Poisson Mixture Fit
/usr/share/hyphy/ChartAddIns/Populate Cells
/usr/share/hyphy/ChartAddIns/Profile Mean Clustering
/usr/share/hyphy/ChartAddIns/Running Sum
/usr/share/hyphy/ChartAddIns/Samplers/lhc.bf
/usr/share/hyphy/ChartAddIns/Samplers/sir.bf
/usr/share/hyphy/ChartAddIns/Samplers/srs.ibf
/usr/share/hyphy/ChartAddIns/Select Cells By Index
/usr/share/hyphy/ChartAddIns/Select Cells By Value
/usr/share/hyphy/ChartAddIns/SingleColumn
/usr/share/hyphy/ChartAddIns/Sort
/usr/share/hyphy/DatapanelAddIns/Character Plot
/usr/share/hyphy/DatapanelAddIns/Character Plot Two
/usr/share/hyphy/DatapanelAddIns/Compare Subsets
/usr/share/hyphy/DatapanelAddIns/Sequence Plot
/usr/share/hyphy/DatapanelAddIns/TBD/Character Plot By Sequence
/usr/share/hyphy/DatapanelAddIns/ibfs/char_colors.def
/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod
/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod
/usr/share/hyphy/GeneticCodes/Ciliate.cod
/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod
/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod
/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod
/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod
/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal
/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated
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/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition
/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal
/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon
/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params.
/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params.
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal
/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal
/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal
/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated
/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set
/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition
/usr/share/hyphy/SubstitutionClasses/aa.bf
/usr/share/hyphy/SubstitutionClasses/codon.bf
/usr/share/hyphy/SubstitutionClasses/dinuc.bf
/usr/share/hyphy/SubstitutionClasses/nuc.bf
/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl
/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl
/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl
/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl
/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl
/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl
/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl
/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf
/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl
/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl
/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69
/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P
/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl
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