Пакет: libfreecontact0v5 (1.0.21-9)

[ Източник: freecontact  ]

fast protein contact predictor library

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the shared library implementing freecontact.

Етикети: Role: Shared Library

Други пакети, свързани с libfreecontact0v5

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  или libblas.so.3

  виртуален пакет, предлаган от libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.0) [не armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgfortran5 (>= 8)

  Runtime library for GNU Fortran applications

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  или liblapack.so.3

  виртуален пакет, предлаган от libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

Изтегляне на libfreecontact0v5

Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	72,9 кБ	185,0 кБ	[списък на файловете]
arm64	65,3 кБ	160,0 кБ	[списък на файловете]
armel	56,6 кБ	152,0 кБ	[списък на файловете]
armhf	57,1 кБ	120,0 кБ	[списък на файловете]
i386	62,2 кБ	168,0 кБ	[списък на файловете]
mips64el	66,0 кБ	183,0 кБ	[списък на файловете]
mipsel	65,8 кБ	174,0 кБ	[списък на файловете]
ppc64el	76,6 кБ	213,0 кБ	[списък на файловете]
s390x	66,6 кБ	193,0 кБ	[списък на файловете]