Пакет: ariba (2.14.6+ds-1 и други)

[ Източник: ariba  ]

Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Етикети: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::python, User Interface: Command Line, Role: role::program, scope::application, Purpose: Analysing

Други пакети, свързани с ariba

• dep: bowtie2 (>= 2.1.0)

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: fastaq (>= 3.12.0)

  FASTA and FASTQ file manipulation tools

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [mips64el]

• dep: libfml0 (>= 0.1-4~)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libminimap0 (>= 0.2)

  library for approximate mapping of long biosequences

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: mash

  fast genome and metagenome distance estimation using MinHash

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10)

  dep: python3 (>= 3.9~)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-bs4

  error-tolerant HTML parser for Python 3

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-pymummer (>= 0.10.2)

  Python 3 interface to MUMmer

• dep: python3-pysam (>= 0.9.1)

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-tk

  Tkinter - Writing Tk applications with Python 3.x

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: spades

  genome assembler for single-cell and isolates data sets

Изтегляне на ariba

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	2.14.6+ds-1+b2	1 910,7 кБ	20 456,0 кБ	[списък на файловете]
arm64	2.14.6+ds-1+b2	1 906,9 кБ	20 436,0 кБ	[списък на файловете]
mips64el	2.14.6+ds-1+b2	1 906,5 кБ	20 457,0 кБ	[списък на файловете]
ppc64el	2.14.6+ds-1+b2	1 907,9 кБ	20 532,0 кБ	[списък на файловете]