Пакет: kissplice (2.6.2-2)

[ Източник: kissplice  ]

Detection of various kinds of polymorphisms in RNA-seq data

KisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads.

Други пакети, свързани с kissplice

• dep: bcalm

  de Bruijn compaction in low memory

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Изтегляне на kissplice

Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
ppc64el	491,3 кБ	1 435,0 кБ	[списък на файловете]