Пакет: q2cli (2022.11.1-2)

[ Източник: q2cli  ]

Click-based command line interface for QIIME 2

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,

graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

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  interactive high-level object-oriented language (default python3 version)

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-setuptools

  Python3 Distutils Enhancements

• dep: q2-feature-table (>= 2021.11.1)

  QIIME 2 plugin supporting operations on feature tables

• dep: qiime (>= 2021.11.1)

  Quantitative Insights Into Microbial Ecology

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