Пакет: libfreecontact-perl (0.08-8)

[ Източник: libfreecontact-perl  ]

fast protein contact predictor - binding for Perl

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Perl binding.

Етикети: Software Development: Perl Development, Библиотеки, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library

Други пакети, свързани с libfreecontact-perl

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [не amd64, arm64, ppc64el]

• dep: libfreecontact0v5 (>= 1.0.21)

  fast protein contact predictor library

• dep: libgcc-s1 (>= 3.0) [не armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: perl (>= 5.32.0-5)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.32.0

  виртуален пакет, предлаган от perl-base

Изтегляне на libfreecontact-perl

Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	62,6 кБ	213,0 кБ	[списък на файловете]
arm64	60,9 кБ	204,0 кБ	[списък на файловете]
armel	60,4 кБ	200,0 кБ	[списък на файловете]
armhf	59,9 кБ	192,0 кБ	[списък на файловете]
i386	62,9 кБ	216,0 кБ	[списък на файловете]
mips64el	59,6 кБ	210,0 кБ	[списък на файловете]
mipsel	59,7 кБ	213,0 кБ	[списък на файловете]
ppc64el	62,5 кБ	225,0 кБ	[списък на файловете]
s390x	60,8 кБ	209,0 кБ	[списък на файловете]