套件：cct（1:1.0.3-1）
visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences of interest to existing genomes or sequence collections. The comparisons are conducted using BLAST, and the BLAST results are presented in the form of graphical maps that can also show sequence features, gene and protein names, COG category assignments, and sequence composition characteristics. CCT can generate maps in a variety of sizes, including 400 Megapixel maps suitable for posters. Comparisons can be conducted within a particular species or genus, or all available genomes can be used. The entire map creation process, from downloading sequences to redrawing zoomed maps, can be completed easily using scripts included with the CCT. User-defined features or analysis results can be included on maps, and maps can be extensively customized. To simplify program setup, a CCT virtual machine that includes all dependencies preinstalled is available. Detailed tutorials illustrating the use of CCT are included with the CCT documentation.
其他與 cct 有關的套件
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- dep: bioperl
- Perl tools for computational molecular biology
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- dep: cgview
- Circular Genome Viewer
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- dep: imagemagick
- image manipulation programs -- binaries
同時作為一個虛擬套件由這些套件填實： graphicsmagick-imagemagick-compat, imagemagick-6.q16 - 或者 graphicsmagick
- collection of image processing tools
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- dep: liberror-perl
- Perl module for error/exception handling in an OO-ish way
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- dep: libtie-ixhash-perl
- Perl module to order associative arrays
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- dep: libwww-perl
- simple and consistent interface to the world-wide web
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- dep: ncbi-blast+-legacy
- NCBI Blast legacy call script
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- dep: perl
- Larry Wall's Practical Extraction and Report Language