[ 原始碼： discosnp ]
套件：discosnp（1:2.6.2-3 以及其他的）
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
其他與 discosnp 有關的套件
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- dep: gatb-core
- Genome Analysis Toolbox with de-Bruijn graph
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgatbcore3 (>= 1.4.2+dfsg)
- dynamic library of the Genome Analysis Toolbox
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libhdf5-103-1t64
- HDF5 C runtime files - serial version
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
- 壓縮函式庫 - 跑程式時用(runtime)