[ 原始碼： iqtree ]
套件：iqtree（2.0.7+dfsg-1 以及其他的）
efficient phylogenetic software by maximum likelihood
IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others:
* A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms of likelihood while requiring similar amount of computing time (see Nguyen et al., 2015) * An ultrafast bootstrap approximation to assess branch supports (see Minh et al., 2013). * A wide range of substitution models for binary, DNA, protein, codon, and morphological alignments. * Ultrafast model selection for all data types, 10 to 100 times faster than jModelTest and ProtTest. * Finding best partition scheme like PartitionFinder. * Partitioned models with mixed data types for phylogenomic (multi- gene) alignments, allowing for separate, proportional, or joint branch lengths among genes. * Supporting the phylogenetic likelihod library (PLL) (see Flouri et al., 2014)
其他與 iqtree 有關的套件
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- dep: libc6 (>= 2.38)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 4.0) [amd64]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libmpich12 (>= 4.2.0) [i386]
- Shared libraries for MPICH
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- dep: libopenmpi40 (>= 5.0.6) [amd64]
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 13.1) [i386]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [amd64]
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)