套件：atac（0~20150903+r2013-9）

[ 原始碼： kmer  ]

genome assembly-to-assembly comparison

atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.

The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.

Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.

This package is part of the Kmer suite.

其他與 atac 有關的套件

• dep: gnuplot

  Command-line driven interactive plotting program.
  同時作為一個虛擬套件由這些套件填實： gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: leaff

  biological sequence library utilities and applications

• dep: libc6 (>= 2.38)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libfile-which-perl

  Perl module for searching paths for executable programs

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386, riscv64]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: meryl

  in- and out-of-core kmer counting and utilities

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3.12

  Interactive high-level object-oriented language (version 3.12)

• rec: kmer-examples

  sample data for kmer suite of tools for DNA sequence analysis

下載 atac

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	377。4 kB	2，788。0 kB	[檔案列表]
arm64	357。5 kB	3，360。0 kB	[檔案列表]
armel	349。3 kB	2，514。0 kB	[檔案列表]
armhf	345。0 kB	2，102。0 kB	[檔案列表]
i386	401。8 kB	2，994。0 kB	[檔案列表]
mips64el	389。9 kB	3，663。0 kB	[檔案列表]
ppc64el	405。5 kB	3，808。0 kB	[檔案列表]
riscv64	406。7 kB	2，460。0 kB	[檔案列表]
s390x	340。5 kB	2，739。0 kB	[檔案列表]