[ 原始碼： metaphlan2-data ]
套件：metaphlan2-data（2.6.0+ds-4）
metaphlan2-data 的相關連結
Debian 的資源：
下載原始碼套件 metaphlan2-data：
- [metaphlan2-data_2.6.0+ds-4.dsc]
- [metaphlan2-data_2.6.0+ds.orig.tar.xz]
- [metaphlan2-data_2.6.0+ds-4.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [bitbucket.org]
相似套件：
data package for Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species.
MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at src/utils/markers_info.txt.bz2 or here) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:
* unambiguous taxonomic assignments; * accurate estimation of organismal relative abundance; * species-level resolution for bacteria, archaea, eukaryotes and viruses; * strain identification and tracking * orders of magnitude speedups compared to existing methods. * metagenomic strain-level population genomics
This package contains the data for metaphlan2.
其他與 metaphlan2-data 有關的套件
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: debconf (>= 0.5)
- Debian 設定管理系統
- 或者 debconf-2.0
- 本虛擬套件由這些套件填實： cdebconf, cdebconf-udeb, debconf