套件：spaced（1.2.0-201605+dfsg-4 以及其他的）

[ 原始碼： spaced  ]

alignment-free sequence comparison using spaced words

Spaced (Words) is a new approach to alignment-free sequence comparison. While most alignment-free algorithms compare the word-composition of sequences, spaced uses a pattern of care and don't care positions. The occurrence of a spaced word in a sequence is then defined by the characters at the match positions only, while the characters at the don't care positions are ignored. Instead of comparing the frequencies of contiguous words in the input sequences, this new approach compares the frequencies of the spaced words according to the pre-defined pattern. An information-theoretic distance measure is then used to define pairwise distances on the set of input sequences based on their spaced-word frequencies. Systematic test runs on real and simulated sequence sets have shown that, for phylogeny reconstruction, this multiple-spaced-words approach is far superior to the classical alignment-free approach based on contiguous word frequencies.

其他與 spaced 有關的套件

• dep: libc6 (>= 2.38)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC 支援函式庫

• dep: libgomp1 (>= 9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

下載 spaced

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
arm64	1.2.0-201605+dfsg-4+b1	54。6 kB	153。0 kB	[檔案列表]