[ 原始碼： spaln ]
套件：spaln（3.0.2+dfsg-2 以及其他的）
splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.
spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.
其他與 spaln 有關的套件
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- dep: libc6 (>= 2.39)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC 支援函式庫
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- dep: libgsl28 (>= 2.8+dfsg)
- GNU Scientific Library (GSL) -- library package
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- dep: libstdc++6 (>= 5)
- GNU Standard C++ Library v3
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- dep: spaln-data
- splicing-aware transcript-alignment to genomic DNA (data)
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- dep: zlib1g (>= 1:1.2.0.2)
- 壓縮函式庫 - 跑程式時用(runtime)