[ 原始碼： snakemake ]
套件：snakemake（7.32.4-6）
pythonic workflow management system
Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.
其他與 snakemake 有關的套件
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- dep: ca-certificates
- Common CA certificates
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- dep: libjs-bootstrap
- HTML, CSS and JS framework
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- dep: libjs-jquery
- JavaScript library for dynamic web applications
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-configargparse
- replacement for argparse with config files and environment variables
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- dep: python3-connection-pool
- thread-safe connection pool for Python3
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- dep: python3-datrie
- Super-fast, efficiently stored Trie for Python 3
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- dep: python3-docutils
- text processing system for reStructuredText (implemented in Python 3)
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- dep: python3-git
- Python library to interact with Git repositories
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- dep: python3-humanfriendly
- Python3 library to make user friendly text interfaces
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- dep: python3-jinja2 (>= 3.0~)
- small but fast and easy to use stand-alone template engine
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- dep: python3-jsonschema
- An(other) implementation of JSON Schema
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- dep: python3-nbformat
- Jupyter notebook format (Python 3)
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- dep: python3-packaging
- core utilities for python3 packages
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- dep: python3-platformdirs
- determining appropriate platform-specific directories (Python 3)
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- dep: python3-psutil
- module providing convenience functions for managing processes (Python3)
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- dep: python3-pulp (>= 2.0~)
- LP modeler - Python 3.x
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- dep: python3-ratelimiter
- simple Python library for limiting the rate of operations
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- dep: python3-requests
- elegant and simple HTTP library for Python3, built for human beings
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- dep: python3-retry
- easy to use retry decorator
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- dep: python3-smart-open (>= 3.0~)
- utils for streaming large files
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- dep: python3-stopit
- Timeout control decorator and context manager for Python3
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- dep: python3-tabulate
- pretty-print tabular data in Python3
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- dep: python3-throttler
- easy throttling with asyncio support for Python3
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- dep: python3-toposort
- topological sort algorithm - Python 3 module
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- dep: python3-wrapt
- decorators, wrappers and monkey patching. - Python 3.x
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- dep: python3-yte
- YAML template engine with Python expressions
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- rec: cwltool
- Common Workflow Language reference implementation
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- rec: imagemagick
- image manipulation programs -- binaries
同時作為一個虛擬套件由這些套件填實： graphicsmagick-imagemagick-compat, imagemagick-7.q16
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- rec: python3-azure-storage
- Microsoft Azure Storage Library for Python 3.x
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-boto3
- Python interface to Amazon's Web Services - Python 3.x
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- rec: python3-botocore
- Low-level, data-driven core of boto 3 (Python 3)
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- rec: python3-dropbox
- Official Dropbox API Client (Python3 version)
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- rec: python3-flask
- micro web framework based on Werkzeug and Jinja2 - Python 3.x
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- rec: python3-ftputil
- high-level FTP client library for Python
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- rec: python3-irodsclient
- Client API for iRods
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- rec: python3-kubernetes
- Kubernetes Python client - Python 3.x
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- rec: python3-pygments
- syntax highlighting package written in Python 3
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- rec: python3-tz
- Python3 version of the Olson timezone database
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- rec: python3-urllib3
- HTTP library with thread-safe connection pooling for Python3
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- rec: python3-yappi
- Yet Another Python Profiler - Python 3.x
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- sug: slurm-client
- Slurm client side commands
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- sug: snakemake-doc
- documentation for pythonic workflow management system