原始碼套件：bcbio（1.2.9-3） [contrib]
本原始碼套件構建了以下這些二進位制包：
- bcbio
- toolkit for analysing high-throughput sequencing data
- python3-bcbio
- library for analysing high-throughput sequencing data
其他與 bcbio 有關的套件
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- adep: debhelper-compat (= 13)
- 套件暫時不可用
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- adep: dh-sequence-python3
- 本虛擬套件由這些套件填實： dh-python
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- adep: python3-all
- package depending on all supported Python 3 runtime versions
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- adep: python3-setuptools
- Python3 Distutils Enhancements
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- adep: python3-gffutils
- Work with GFF and GTF files in a flexible database framework
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- adep: python3-mock
- Mocking and Testing Library (Python3 version)
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- adep: python3-pandas
- data structures for "relational" or "labeled" data
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- adep: python3-pybedtools
- Python 3 wrapper around BEDTools for bioinformatics work
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- adep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- adep: python3-toolz
- List processing tools and functional utilities
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- adep: python3-tornado
- scalable, non-blocking web server and tools - Python 3 package
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- adep: python3-yaml
- YAML parser and emitter for Python3
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- adep: python3-scipy
- scientific tools for Python 3
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- adep: python3-psutil
- module providing convenience functions for managing processes (Python3)
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- adep: python3-joblib
- tools to provide lightweight pipelining in Python
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- adep: atropos
- NGS read trimming tool that is specific, sensitive, and speedy
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- adep: bcftools
- genomic variant calling and manipulation of VCF/BCF files
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- adep: bedtools
- suite of utilities for comparing genomic features
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- adep: biobambam2
- tools for early stage alignment file processing
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- adep: bowtie2
- ultrafast memory-efficient short read aligner
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- adep: bwa
- Burrows-Wheeler Aligner
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- adep: cnvkit
- Copy number variant detection from targeted DNA sequencing
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- adep: fastqc
- quality control for high throughput sequence data
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- adep: freebayes
- Bayesian haplotype-based polymorphism discovery and genotyping
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- adep: gffread
- GFF/GTF format conversions, region filtering, FASTA sequence extraction
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- adep: grabix
- wee tool for random access into BGZF files
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- adep: gsort
- sort genomic data
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- adep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- adep: libfreetype6
- FreeType 2 font engine, shared library files
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- adep: lumpy-sv
- general probabilistic framework for structural variant discovery
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- adep: mosdepth
- BAM/CRAM depth calculation biological sequencing
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- adep: multiqc
- output integration for RNA sequencing across tools and samples
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- adep: perl
- Larry Wall's Practical Extraction and Report Language
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- adep: libpicard-java
- Java library to manipulate SAM and BAM files
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- adep: libvcflib-tools
- C++ library for parsing and manipulating VCF files (tools)
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- adep: picard-tools
- Command line tools to manipulate SAM and BAM files
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- adep: python3-biopython
- Python3 library for bioinformatics
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- adep: python3-cyvcf2
- VCF parser based on htslib (Python 3)
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- adep: python3-geneimpacts
- wraps command line tools to assess variants in gene sequences
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- adep: python3-logbook
- logging system for Python that replaces the standard library's module (Python 3)
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- adep: python3-requests
- elegant and simple HTTP library for Python3, built for human beings
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- adep: python3-pytest
- Simple, powerful testing in Python3
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- adep: python3-pytest-mock
- Thin wrapper around mock for easier use with pytest (Python 3 module)
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- adep: pythonpy
- 'python -c', with tab completion and shorthand
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- adep: rapmap
- rapid sensitive and accurate DNA read mapping via quasi-mapping
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- adep: rna-star
- ultrafast universal RNA-seq aligner
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- adep: r-base-core
- GNU R core of statistical computation and graphics system
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- adep: r-bioc-htsfilter
- GNU R filter replicated high-throughput transcriptome sequencing data
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- adep: r-bioc-degreport
- BioConductor report of DEG analysis
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- adep: r-bioc-purecn
- copy number calling and SNV classification using targeted short read sequencing
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- adep: r-bioc-summarizedexperiment
- BioConductor assay container
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- adep: r-cran-tidyverse
- Easily Install and Load the 'Tidyverse'
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- adep: r-bioc-titancna
- Subclonal copy number and LOH prediction from whole genome sequencing
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- adep: r-bioc-tximport
- transcript-level estimates for biological sequencing
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- adep: r-other-wasabi
- prepare Sailfish and Salmon output for downstream analysis using GNU R
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- adep: salmon
- wicked-fast transcript quantification from RNA-seq data
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- adep: samblaster
- marks duplicates, extracts discordant/split reads
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- adep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- adep: seqan-apps
- C++ library for the analysis of biological sequences
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- adep: seqtk
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
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- adep: snpeff
- genetic variant annotation and effect prediction toolbox - tool
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- adep: subread
- toolkit for processing next-gen sequencing data
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- adep: tabix
- generic indexer for TAB-delimited genome position files
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- adep: tophat-recondition
- post-processor for TopHat unmapped reads
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- adep: umis
- tools for processing UMI RNA-tag data
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- adep: vcfanno
- annotate a VCF with other VCFs/BEDs/tabixed files
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- adep: vt
- toolset for short variant discovery in genetic sequence data
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- adep: wham-align
- Wisconsin's High-Throughput Alignment Method
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- adep: xonsh
- Python-powered, cross-platform, Unix-gazing shell
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- adep: libhts-dev
- development files for the HTSlib
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- adep: python3-sphinx
- documentation generator for Python projects
Download bcbio
| 檔案 | 大小（單位：kB） | MD5 校驗碼 |
|---|---|---|
| bcbio_1.2.9-3.dsc | 3。5 kB | 49f1f21bc251dd0bb251a90306353311 |
| bcbio_1.2.9.orig.tar.gz | 17，147。3 kB | f905ba65f95528306afd35e77e3b7257 |
| bcbio_1.2.9-3.debian.tar.xz | 15。0 kB | 5ef7c4295d695a3f2444ba180f89b799 |
- Debian 套件原始碼倉庫（VCS：Git）
- https://salsa.debian.org/med-team/bcbio.git
- Debian 套件原始碼倉庫（可線上瀏覽）
- https://salsa.debian.org/med-team/bcbio