套件：maffilter（1.3.1+dfsg-6 以及其他的） [debports]
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
其他與 maffilter 有關的套件
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams Library
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- dep: libbpp-core4t64 (>= 2.4.1)
- Bio++ Core library
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- dep: libbpp-phyl-omics3t64 (>= 2.4.1)
- Bio++ Phylogenetics library: genomics components
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- dep: libbpp-phyl12t64 (>= 2.4.1)
- Bio++ Phylogenetic library
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- dep: libbpp-seq-omics3t64 (>= 2.4.1)
- Bio++ Sequence library: genomics components
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- dep: libbpp-seq12t64 (>= 2.4.1)
- Bio++ Sequence library
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- sug: maffilter-examples
- process genome alignment in the Multiple Alignment Format (example data)