套件：r-bioc-shortread（1.60.0-2） [debports]
GNU R classes and methods for high-throughput short-read sequencing data
This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.
其他與 r-bioc-shortread 有關的套件
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- dep: libc6 (>= 2.37)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-api-bioc-3.18
- 套件暫時不可用
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- dep: r-bioc-biobase
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.23.3)
- generic functions for Bioconductor
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- dep: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
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- dep: r-bioc-biostrings (>= 2.47.6)
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomeinfodb (>= 1.15.2)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicalignments (>= 1.15.6)
- BioConductor representation and manipulation of short genomic alignments
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- dep: r-bioc-genomicranges (>= 1.31.8)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.13.12)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rhtslib
- HTSlib high-throughput sequencing library as GNU R package
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- dep: r-bioc-rsamtools (>= 1.31.2)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-s4vectors (>= 0.17.25)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-xvector
- BioConductor representation and manpulation of external sequences
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- dep: r-bioc-zlibbioc
- (Virtual) zlibbioc Bioconductor package
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- dep: r-cran-hwriter
- HTML Writer - Outputs R objects in HTML format
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- dep: r-cran-lattice
- GNU R package for 'Trellis' graphics
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- dep: r-cran-latticeextra
- GNU R package of additional graphical displays based on lattice
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-biomart
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-cran-runit
- GNU R package providing unit testing framework