套件：mapsembler2（2.1.6+dfsg-1） [debports]
bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).
It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. - Checks if a gene (input as starter) has an homolog in a set of reads - Checks if a known enzyme is present in a metagenomic NGS read set. - Enrich unmappable reads by extending them, possibly making them mappable - Checks what happens at the extremities of a contig - Remove contaminants or symbiont reads from a read set
其他與 mapsembler2 有關的套件
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- dep: bc
- GNU bc arbitrary precision calculator language
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- dep: libc6 (>= 2.17)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc1 (>= 1:4.3)
- 套件暫時不可用
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- dep: libstdc++6 (>= 4.4.0)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.2.3.4)
- 壓縮函式庫 - 跑程式時用(runtime)