[ 原始碼： r-bioc-fishpond ]
套件：r-bioc-fishpond（2.10.0+ds-1）
r-bioc-fishpond 的相關連結
Debian 的資源：
下載原始碼套件 r-bioc-fishpond：
- [r-bioc-fishpond_2.10.0+ds-1.dsc]
- [r-bioc-fishpond_2.10.0+ds.orig.tar.xz]
- [r-bioc-fishpond_2.10.0+ds-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [bioconductor.org]
相似套件：
Differential transcript and gene expression with inferential replicates
Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains utilities for working with Salmon and Alevin quantification files.
其他與 r-bioc-fishpond 有關的套件
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-api-bioc-3.19
- 本虛擬套件由這些套件填實： r-bioc-biocgenerics
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- dep: r-bioc-genomicranges (>= 1.56.1)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.38.1)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-qvalue (>= 2.36.0)
- GNU R package for Q-value estimation for FDR control
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- dep: r-bioc-s4vectors (>= 0.42.1)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-singlecellexperiment (>= 1.26.0)
- S4 Classes for Single Cell Data
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- dep: r-bioc-summarizedexperiment (>= 1.34.0)
- BioConductor assay container
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- dep: r-cran-abind
- GNU R abind multi-dimensional array combination function
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- dep: r-cran-gtools
- GNU R package with R programming tools by Greg Warnes et al
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- dep: r-cran-jsonlite
- Robust, High Performance JSON Parser and Generator for R
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- dep: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
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- dep: r-cran-matrixstats
- GNU R methods that apply to rows and columns of a matrix
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- dep: r-cran-svmisc
- SciViews - Miscellaneous Functions
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- sug: r-bioc-annotationdbi (>= 1.66.0)
- GNU R Annotation Database Interface for BioConductor
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- sug: r-bioc-deseq2 (>= 1.44.0)
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-ensembldb (>= 2.28.0)
- GNU R utilities to create and use an Ensembl based annotation database
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- sug: r-bioc-genomeinfodb (>= 1.40.1)
- BioConductor utilities for manipulating chromosome identifiers
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- sug: r-bioc-genomicfeatures (>= 1.56.0)
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-gviz (>= 1.48.0)
- Plotting data and annotation information along genomic coordinates
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- sug: r-bioc-limma (>= 3.60.4)
- linear models for microarray data
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- sug: r-bioc-org.hs.eg.db (>= 3.19.1)
- genome-wide annotation for Human
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- sug: r-bioc-tximeta (>= 1.22.1)
- Transcript Quantification Import with Automatic Metadata
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- sug: r-bioc-tximportdata (>= 1.32.0)
- GNU R various transcript abundance quantifiers
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- sug: r-cran-data.table
- GNU R extension of Data.frame
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-pheatmap
- GNU R package to create pretty heatmaps
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-samr
- GNU R significance analysis of microarrays
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- sug: r-cran-testthat
- GNU R testsuite