[ 原始碼： r-bioc-dexseq ]
套件：r-bioc-dexseq（1.50.0+dfsg-1）
r-bioc-dexseq 的相關連結
Debian 的資源：
下載原始碼套件 r-bioc-dexseq：
- [r-bioc-dexseq_1.50.0+dfsg-1.dsc]
- [r-bioc-dexseq_1.50.0+dfsg.orig.tar.xz]
- [r-bioc-dexseq_1.50.0+dfsg-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [bioconductor.org]
相似套件：
GNU R inference of differential exon usage in RNA-Seq
The package is focused on finding differential exon usage using RNA-seq exon counts between samples with different experimental designs. It provides functions that allows the user to make the necessary statistical tests based on a model that uses the negative binomial distribution to estimate the variance between biological replicates and generalized linear models for testing. The package also provides functions for the visualization and exploration of the results.
其他與 r-bioc-dexseq 有關的套件
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-api-bioc-3.19
- 本虛擬套件由這些套件填實： r-bioc-biocgenerics
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- dep: r-bioc-annotationdbi (>= 1.66.0)
- GNU R Annotation Database Interface for BioConductor
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- dep: r-bioc-biobase (>= 2.64.0)
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.50.0)
- generic functions for Bioconductor
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- dep: r-bioc-biocparallel (>= 1.38.0)
- BioConductor facilities for parallel evaluation
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- dep: r-bioc-biomart (>= 2.60.1)
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-deseq2 (>= 1.44.0)
- R package for RNA-Seq Differential Expression Analysis
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- dep: r-bioc-genefilter (>= 1.86.0)
- methods for filtering genes from microarray experiments
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- dep: r-bioc-geneplotter (>= 1.82.0)
- R package of functions for plotting genomic data
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- dep: r-bioc-genomicranges (>= 1.56.1)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.38.1)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rsamtools (>= 2.20.0)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-s4vectors (>= 0.42.1)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment (>= 1.34.0)
- BioConductor assay container
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- dep: r-cran-hwriter
- HTML Writer - Outputs R objects in HTML format
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- dep: r-cran-rcolorbrewer
- GNU R package providing suitable color palettes
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- dep: r-cran-statmod
- GNU R package providing algorithms and functions for statistical modeling
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- dep: r-cran-stringr
- Make it easier to work with strings
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- sug: r-bioc-biocstyle (>= 2.32.1)
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-genomicalignments (>= 1.40.0)
- BioConductor representation and manipulation of short genomic alignments
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- sug: r-bioc-genomicfeatures (>= 1.56.0)
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-glmgampoi (>= 1.16.0)
- GNU R fit a Gamma-Poisson generalized linear model
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- sug: r-bioc-txdbmaker
- Tools for making TxDb objects from genomic annotations
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-roxygen2
- in-line documentation for GNU R
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- sug: r-cran-testthat
- GNU R testsuite