[ 原始碼： r-cran-bio3d ]
套件：r-cran-bio3d（2.4-4-1）
GNU R package for biological structure analysis
The bio3d package contains utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, and principal component analysis (PCA). In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.
其他與 r-cran-bio3d 有關的套件
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- dep: libc6 (>= 2.17)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-base-core (>= 4.2.1-3)
- GNU R core of statistical computation and graphics system
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- dep: r-cran-rcpp
- GNU R package for Seamless R and C++ Integration
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: clustalo
- General-purpose multiple sequence alignment program for proteins
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- rec: dssp
- protein secondary structure assignment based on 3D structure
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- rec: muscle
- Multiple alignment program of protein sequences
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- rec: mustang
- multiple structural alignment of proteins
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- rec: r-cran-testthat (>= 0.9.1)
- GNU R testsuite
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- sug: r-bioc-biostrings
- GNU R string objects representing biological sequences
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- sug: r-cran-bigmemory
- Manage Massive Matrices with Shared Memory and Memory-Mapped Files
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- sug: r-cran-httr
- GNU R tools for working with URLs and HTTP
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- sug: r-cran-igraph
- GNU R network analysis and visualization
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-lattice
- GNU R package for 'Trellis' graphics
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- sug: r-cran-ncdf4
- GNU R interface to Unidata netCDF format data files
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- sug: r-cran-rcurl
- GNU R General network (HTTP/FTP/...) client interface
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-xml
- GNU R package for XML parsing and generation