[ 原始碼： unifrac ]
套件：python3-unifrac（1.3-4）
high-performance phylogenetic diversity calculations
The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.
This package contains the Python3 module.
其他與 python3-unifrac 有關的套件
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- dep: libc6 (>= 2.17)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libssu0 (>= 1.4)
- high-performance phylogenetic diversity calculations (lib)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.13)
- dep: python3 (>= 3.12~)
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- dep: python3-biom-format
- Biological Observation Matrix (BIOM) format (Python 3)
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- dep: python3-h5py (>= 3.3.0)
- general-purpose Python interface to hdf5
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- dep: python3-iow
- balanced parentheses tree structure
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- dep: python3-numpy (>= 1:1.25.0)
- Fast array facility to the Python language (Python 3)
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- dep: python3-numpy-abi9
- 本虛擬套件由這些套件填實： python3-numpy
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- dep: python3-skbio (>= 0.6.1)
- Python3 data structures, algorithms, educational resources for bioinformatic