套件：seqan-needle（1.0.2+ds-2） [debports]
pre-filter for the counting of very large collections of nucleotide sequences
Needle is a tool for semi-quantitative analysis of very large collections of nucleotide sequences.
Needle stores its data in multiple interleaved Bloom filter, a fast and space efficient probabilistic data structure and uses a windowing scheme (also called minimisers) to reduce the amount of data to store. How many interleaved Bloom filter are used is defined by the user. Each interleaved Bloom filter has a so called expression threshold and stores minimisers with an occurrence greater than or equal to its own expression threshold and smaller than the next biggest expression threshold (if there is no bigger expression threshold, all greater than or equal to the threshold are stored). These expression thresholds are then used during the query (called estimate) to approximate the expression values of given transcripts.
其他與 seqan-needle 有關的套件
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- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
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- dep: libc6.1 (>= 2.37)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
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- dep: libgcc-s1 (>= 4.2)
- GCC 支援函式庫
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: libunwind8
- library to determine the call-chain of a program - runtime
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)