[ 原始碼： cufflinks ]
套件：cufflinks（2.2.1+dfsg.1-10） [non-free]
cufflinks 的相關連結
Debian 的資源：
下載原始碼套件 cufflinks：
- [cufflinks_2.2.1+dfsg.1-10.dsc]
- [cufflinks_2.2.1+dfsg.1.orig.tar.gz]
- [cufflinks_2.2.1+dfsg.1-10.debian.tar.xz]
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Alexandre Mestiashvili (QA 頁面)
- Andreas Tille (QA 頁面)
- Charles Plessy (QA 頁面)
外部的資源：
- 主頁 [cufflinks.cbcb.umd.edu]
相似套件：
Transcript assembly, differential expression and regulation for RNA-Seq
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.
This package provides the binary of cufflinks and associated tools, i.e. compress_gtf, cuffcompare, cuffdiff, cuffmerge, cuffnorm, cuffquant and gtf_to_sam.
其他與 cufflinks 有關的套件
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- dep: libboost-serialization1.83.0 (>= 1.83.0)
- serialization library for C++
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- dep: libboost-thread1.83.0 (>= 1.83.0)
- portable C++ multi-threading
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- dep: libc6 (>= 2.38)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 7)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.3.3)
- 壓縮函式庫 - 跑程式時用(runtime)
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- rec: gffread
- GFF/GTF format conversions, region filtering, FASTA sequence extraction
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- enh: tophat
- 套件暫時不可用