[ 原始碼： bioperl-run ]
套件：bioperl-run（1.7.3-11）
bioperl-run 的相關連結
Debian 的資源：
下載原始碼套件 bioperl-run：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Charles Plessy (QA 頁面)
- Andreas Tille (QA 頁面)
- Étienne Mollier (QA 頁面)
外部的資源：
- 主頁 [metacpan.org]
相似套件：
BioPerl wrappers: scripts
Contains scripts from the BioPerl-Run package. This package will also install all wrappable applications packaged in Debian. The ones that are not Free are "Suggested" by this package.
其他與 bioperl-run 有關的套件
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- dep: bioperl (>= 1.7.4)
- Perl tools for computational molecular biology
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- dep: default-jdk-headless
- Standard Java or Java compatible Development Kit (headless)
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- dep: libbio-cluster-perl
- BioPerl cluster modules
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- dep: libbio-eutilities-perl
- BioPerl interface to the Entrez Programming Utilities (E-utilities)
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- dep: libbio-featureio-perl
- Modules for reading, writing, and manipulating sequence features
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- dep: libbio-perl-run-perl (= 1.7.3-11)
- BioPerl wrappers: modules
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- dep: libbio-tools-run-remoteblast-perl
- Object for remote execution of the NCBI Blast via HTTP
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- dep: libsoap-lite-perl
- Perl implementation of a SOAP client and server
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- dep: libtest-requiresinternet-perl
- module to easily test network connectivity
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- rec: amap-align
- Protein multiple alignment by sequence annealing
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- rec: bwa
- Burrows-Wheeler Aligner
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- rec: exonerate
- generic tool for pairwise sequence comparison
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- rec: kalign
- Global and progressive multiple sequence alignment
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- rec: lagan
- highly parametrizable pairwise global genome sequence aligner
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- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: maq
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
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- rec: muscle
- Multiple alignment program of protein sequences
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- rec: ncbi-blast+-legacy
- NCBI Blast legacy call script
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- rec: ncoils
- coiled coil secondary structure prediction
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- rec: pal2nal
- converts proteins to genomic DNA alignment
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- rec: phylip
- package of programs for inferring phylogenies
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- rec: primer3
- tool to design flanking oligo nucleotides for DNA amplification
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- rec: probalign
- multiple sequence alignment using partition function posterior probabilities
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- rec: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
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- rec: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- rec: sim4
- tool for aligning cDNA and genomic DNA
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- rec: t-coffee
- Multiple Sequence Alignment
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- rec: wise
- comparison of biopolymers, like DNA and protein sequences
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- sug: bedtools
- suite of utilities for comparing genomic features
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- sug: bowtie
- Ultrafast memory-efficient short read aligner
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- sug: clustalw
- global multiple nucleotide or peptide sequence alignment
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- sug: emboss
- European molecular biology open software suite
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- sug: fasta3
- tools for searching collections of biological sequences
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- sug: gmap
- spliced and SNP-tolerant alignment for mRNA and short reads
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- sug: hmmer
- profile hidden Markov models for protein sequence analysis
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- sug: infernal
- inference of RNA secondary structural alignments
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- sug: libbio-tools-run-alignment-clustalw-perl
- Bioperl interface to Clustal W
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- sug: pftools
- build and search protein and DNA generalized profiles
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- sug: tigr-glimmer
- Gene detection in archea and bacteria
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- sug: trnascan-se
- detection of transfer RNA genes in genomic sequence