套件：libtfbs-perl（0.7.1+ds-4 以及其他的） [debports]
scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".
Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
其他與 libtfbs-perl 有關的套件
|
|
|
|
-
- dep: bioperl
- Perl tools for computational molecular biology
-
- dep: libc6 (>= 2.38)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
-
- dep: libdbi-perl
- Perl Database Interface (DBI)
-
- dep: libwww-perl
- simple and consistent interface to the world-wide web
-
- dep: pdl (>= 1:2.095-1)
- perl data language: Perl extensions for numerics
-
- dep: perl (>= 5.40.0-8)
- Larry Wall's Practical Extraction and Report Language
-
- dep: perlapi-5.40.0
- 本虛擬套件由這些套件填實： perl-base
-
- rec: libgd-gd2-perl
- 本虛擬套件由這些套件填實： libgd-perl
- 或者 libgd-gd2-noxpm-perl
- 本虛擬套件由這些套件填實： libgd-perl