[ 原始碼： r-bioc-edaseq ]
套件：r-bioc-edaseq（2.38.0+dfsg-1）
r-bioc-edaseq 的相關連結
Debian 的資源：
下載原始碼套件 r-bioc-edaseq：
- [r-bioc-edaseq_2.38.0+dfsg-1.dsc]
- [r-bioc-edaseq_2.38.0+dfsg.orig.tar.xz]
- [r-bioc-edaseq_2.38.0+dfsg-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [bioconductor.org]
相似套件：
GNU R exploratory data analysis and normalization for RNA-Seq
Numerical and graphical summaries of RNA-Seq read data. Within-lane normalization procedures to adjust for GC-content effect (or other gene-level effects) on read counts: loess robust local regression, global-scaling, and full-quantile normalization (Risso et al., 2011). Between-lane normalization procedures to adjust for distributional differences between lanes (e.g., sequencing depth): global-scaling and full-quantile normalization (Bullard et al., 2010).
其他與 r-bioc-edaseq 有關的套件
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-api-bioc-3.19
- 本虛擬套件由這些套件填實： r-bioc-biocgenerics
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- dep: r-bioc-annotationdbi (>= 1.66.0)
- GNU R Annotation Database Interface for BioConductor
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- dep: r-bioc-aroma.light (>= 3.34.0)
- BioConductor methods normalization and visualization of microarray data
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- dep: r-bioc-biobase (>= 2.64.0)
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.50.0)
- generic functions for Bioconductor
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- dep: r-bioc-biomart (>= 2.60.1)
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-biostrings (>= 2.72.1)
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomicfeatures (>= 1.56.0)
- GNU R tools for making and manipulating transcript centric annotations
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- dep: r-bioc-genomicranges (>= 1.56.1)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.38.1)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rsamtools (>= 2.20.0)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-shortread (>= 1.62.0)
- GNU R classes and methods for high-throughput short-read sequencing data
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- dep: r-cran-biocmanager
- access the Bioconductor project package repository
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- sug: r-bioc-biocstyle (>= 2.32.1)
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-deseq2 (>= 1.44.0)
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-edger (>= 4.2.1)
- Empirical analysis of digital gene expression data in R
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- sug: r-cran-kernsmooth
- GNU R package for kernel smoothing and density estimation
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-testthat
- GNU R testsuite