[ 原始碼： ariba ]
套件：ariba（2.14.7+ds-5）
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
其他與 ariba 有關的套件
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq
- FASTA and FASTQ file manipulation tools
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- dep: libc6 (>= 2.17)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libfml0 (>= 0.1)
- library for assembling Illumina short reads in small regions
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libminimap0 (>= 0.2)
- library for approximate mapping of long biosequences
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.14)
- dep: python3 (>= 3.12~)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-bs4 (>= 4.1.0)
- error-tolerant HTML parser for Python 3
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: python3-pymummer
- Python 3 interface to MUMmer
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
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- sug: spades
- genome assembler for single-cell and isolates data sets