套件：fasttree（2.1.11-2）
fasttree 的相關連結
Debian 的資源：
下載原始碼套件 fasttree：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Steffen Moeller (QA 頁面)
- Thorsten Alteholz (QA 頁面)
- Andreas Tille (QA 頁面)
- Roland Fehrenbacher (QA 頁面)
外部的資源：
- 主頁 [www.microbesonline.org]
相似套件：
phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.
FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").
This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).
其他與 fasttree 有關的套件
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- dep: libc6 (>= 2.29)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library