套件：pscan-tfbs（1.2.2-3）
search for transcription factor binding sites
Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.
Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.
其他與 pscan-tfbs 有關的套件
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- dep: libc6 (>= 2.14) [amd64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.4) [armhf, i386]
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- dep: libgcc1 (>= 1:3.3.1) [除 armhf]
- GCC 支援函式庫
- dep: libgcc1 (>= 1:3.5) [armhf]
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- dep: libgsl23 (>= 2.5)
- GNU Scientific Library (GSL) -- library package
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- dep: libgslcblas0 (>= 2.4)
- GNU Scientific Library (GSL) -- blas library package
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3