[ 原始碼： bioperl-run ]
套件：bioperl-run（1.7.2-4）
BioPerl wrappers: scripts
Contains scripts from the BioPerl-Run package. This package will also install all wrappable applications packaged in Debian. The ones that are not Free are "Suggested" by this package.
其他與 bioperl-run 有關的套件
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- dep: bioperl
- Perl tools for computational molecular biology
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- dep: libbio-perl-run-perl (= 1.7.2-4)
- BioPerl wrappers: modules
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- rec: amap-align
- Protein multiple alignment by sequence annealing
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- rec: bedtools
- suite of utilities for comparing genomic features
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- rec: blast2
- transitional dummy package to ncbi-blast+-legacy
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- rec: bowtie
- Ultrafast memory-efficient short read aligner
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- rec: bwa
- Burrows-Wheeler Aligner
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- rec: clustalw
- global multiple nucleotide or peptide sequence alignment
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- rec: emboss
- European molecular biology open software suite
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- rec: exonerate
- generic tool for pairwise sequence comparison
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- rec: hmmer
- profile hidden Markov models for protein sequence analysis
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- rec: hyphy-mpi
- Hypothesis testing using Phylogenies (MPI version)
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- rec: infernal
- inference of RNA secondary structural alignments
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- rec: kalign
- Global and progressive multiple sequence alignment
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- rec: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: maq
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
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- rec: muscle
- Multiple alignment program of protein sequences
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- rec: ncoils
- coiled coil secondary structure prediction
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- rec: phylip
- package of programs for inferring phylogenies
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- rec: phyml
- Phylogenetic estimation using Maximum Likelihood
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- rec: primer3
- tool to design flanking oligo nucleotides for DNA amplification
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- rec: probalign
- multiple sequence alignment using partition function posterior probabilities
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- rec: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
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- rec: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: sim4
- tool for aligning cDNA and genomic DNA
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- rec: t-coffee
- Multiple Sequence Alignment
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- rec: tigr-glimmer
- Gene detection in archea and bacteria
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- rec: wise
- comparison of biopolymers, like DNA and protein sequences